Transcriptome profiles of the clam Meretrix petechialis hepatopancreas in response to Vibrio infection

doi:10.1016/j:fsi.2017.01.024

IOCAS-IR > 实验海洋生物学重点实验室

	Transcriptome profiles of the clam Meretrix petechialis hepatopancreas in response to Vibrio infection
	Jiang, Fengjuan 1,2; Yue, Xin 1; Wang, Hongxia 1; Liu, Baozhong1,3
	2017-03-01
发表期刊	FISH & SHELLFISH IMMUNOLOGY
卷号	62 页码:175-183
文章类型	Article
摘要	Microbial diseases have received much attention due to their enormous destruction of aquaculture, and Vibrio parahaemolyticus is one of the main pathogens that cause bacterial disease in the clam Meretrix petechialis. To better understand the molecular mechanisms of the immune response to Vibrio in M. petechialis, RNA-Seq was applied to explore global expression changes of hepatopancreas from this clam after Vibrio challenge. There were 199,318,966 clean reads obtained by Illumina sequencing, which were further assembled into 214,577 transcripts, and then 147,255 unigenes with an N50 of 1393 bp were identified. Gene ontology (GO) analysis revealed 21 biological process subcategories, 15 cellular component subcategories and 12 molecular function subcategories. A total of 8358 unigenes were mapped onto 267 biological signaling pathways by KEGG, among which there were 16 pathways related to the immune system. In total, 206 differentially expressed genes (DEGs) were identified, including 113 up-regulated unigenes and 93 down-regulated unigenes. In these DEGs, 96 DEGs were annotated in at least one database, accounting for 46.60% of all significant DEGs. To validate the transcriptome dataset, 15 DEGs were selected for real-time qPCR confirmation and the results showed that expression patterns of 13 genes (86.7%) agreed well with the RNA-Seq analysis. Fourteen of the 206 DEGs were annotated to be immune-related genes, and we examined the expression patterns of four immune-related DEGs using clams post immersion challenge. This study enriched the M. petechialis transcriptome database and provided insight into the immune response of M. petechialis against Vibrio infection. (C) 2017 Elsevier Ltd. All rights reserved.
关键词	Meretrix Petechialis Vibrio Degs Innate Immunity
DOI	10.1016/j:fsi.2017.01.024
收录类别	SCI
语种	英语
WOS记录号	WOS:000395955800019
引用统计	被引频次：32[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
版本	出版稿
条目标识符	http://ir.qdio.ac.cn/handle/337002/136773
专题	实验海洋生物学重点实验室
作者单位	1.Chinese Acad Sci, Inst Oceanol, Key Lab Expt Marine Biol, Qingdao 266071, Peoples R China 2.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 3.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Biol & Biotechnol, Qingdao 266000, Peoples R China
第一作者单位	实验海洋生物学重点实验室
推荐引用方式 GB/T 7714	Jiang, Fengjuan,Yue, Xin,Wang, Hongxia,et al. Transcriptome profiles of the clam Meretrix petechialis hepatopancreas in response to Vibrio infection[J]. FISH & SHELLFISH IMMUNOLOGY,2017,62:175-183.
APA	Jiang, Fengjuan,Yue, Xin,Wang, Hongxia,&Liu, Baozhong.(2017).Transcriptome profiles of the clam Meretrix petechialis hepatopancreas in response to Vibrio infection.FISH & SHELLFISH IMMUNOLOGY,62,175-183.
MLA	Jiang, Fengjuan,et al."Transcriptome profiles of the clam Meretrix petechialis hepatopancreas in response to Vibrio infection".FISH & SHELLFISH IMMUNOLOGY 62(2017):175-183.

条目包含的文件
文件名称/大小	文献类型	版本类型	开放类型	使用许可
Transcriptome profil（1019KB）	期刊论文	出版稿	限制开放	CC BY-NC-SA	浏览