Actin genes and their expression in pacific white shrimp, Litopenaeus vannamei

doi:10.1007/s00438-017-1397-y

IOCAS-IR > 实验海洋生物学重点实验室

	Actin genes and their expression in pacific white shrimp, Litopenaeus vannamei
	Zhang, Xiaoxi 1,2,3; Zhang, Xiaojun 1,2; Yuan, Jianbo 1,2; Du, Jiangli1,2,3 ; Li, Fuhua 1,2; Xiang, Jianhai1,2
	2018-04-01
发表期刊	MOLECULAR GENETICS AND GENOMICS
ISSN	1617-4615
卷号	293 期号:2 页码:479-493
通讯作者	Zhang, Xiaoxi(xiaoxizhang11@gmail.com)
摘要	Actin is a multi-functional gene family that can be divided into muscle-type actins and non-muscle-type actins. In this study, 37 unigenes encoding actins were identified from RNA-Seq data of Pacific white shrimp, Litopenaeus vannamei. According to phylogenetic analysis, four and three cDNAs belong to cytoplasmic- and heart-type actins and were named LvActinCT and LvActinHT, respectively. 10 cDNAs belong to the slow-type skeletal muscle actins, and 18 belong to the fast-type skeletal muscle actins; they were designated LvActinSSK and LvActinFSK, respectively. Some muscle actin genes formed gene clusters in the genome. Multiple alternative transcription starts sites (ATSSs) were found for LvActinCT1. Based on the early developmental expression profile, almost all LvActins were highly expressed between the early limb bud and post-larval stages. Using LvActinSSK5 as probes, slow-type muscle was localized in pleopod muscle and superficial ventral muscle. We also found three actin genes that were down-regulated in the hemocytes of white spot syndrome virus (WSSV)- and Vibrio parahaemolyticus-infected L. vannamei. This study provides valuable information on the actin gene structure of shrimp, furthers our understanding of the shrimp muscle system and helps us develop strategies for disease control and sustainable shrimp farming.
关键词	Actin gene Litopenaeus vannamei RNA-Seq Muscle development Disease control
DOI	10.1007/s00438-017-1397-y
收录类别	SCI
语种	英语
资助项目	National Natural Science Foundation of China[31672632] ; National Natural Science Foundation of China[41506189] ; National Natural Science Foundation of China[41376165] ; China Agriculture Research System-47[CARS-47] ; Scientific and Technological Innovation Project - Qingdao National Laboratory for Marine Science and Technology[2015ASKJ02-3] ; National Natural Science Foundation of China[31672632] ; National Natural Science Foundation of China[41506189] ; National Natural Science Foundation of China[41376165] ; China Agriculture Research System-47[CARS-47] ; Scientific and Technological Innovation Project - Qingdao National Laboratory for Marine Science and Technology[2015ASKJ02-3]
WOS研究方向	Biochemistry & Molecular Biology ; Genetics & Heredity
WOS类目	Biochemistry & Molecular Biology ; Genetics & Heredity
WOS记录号	WOS:000427630400014
出版者	SPRINGER HEIDELBERG
引用统计	被引频次：11[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.qdio.ac.cn/handle/337002/158117
专题	实验海洋生物学重点实验室
通讯作者	Zhang, Xiaoxi
作者单位	1.Chinese Acad Sci, Inst Oceanol, Key Lab Expt Marine Biol, Qingdao 266071, Peoples R China 2.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Biol & Biotechnol, Qingdao 266237, Peoples R China 3.Univ Chinese Acad Sci, Beijing 100049, Peoples R China
第一作者单位	实验海洋生物学重点实验室
通讯作者单位	实验海洋生物学重点实验室
推荐引用方式 GB/T 7714	Zhang, Xiaoxi,Zhang, Xiaojun,Yuan, Jianbo,et al. Actin genes and their expression in pacific white shrimp, Litopenaeus vannamei[J]. MOLECULAR GENETICS AND GENOMICS,2018,293(2):479-493.
APA	Zhang, Xiaoxi,Zhang, Xiaojun,Yuan, Jianbo,Du, Jiangli,Li, Fuhua,&Xiang, Jianhai.(2018).Actin genes and their expression in pacific white shrimp, Litopenaeus vannamei.MOLECULAR GENETICS AND GENOMICS,293(2),479-493.
MLA	Zhang, Xiaoxi,et al."Actin genes and their expression in pacific white shrimp, Litopenaeus vannamei".MOLECULAR GENETICS AND GENOMICS 293.2(2018):479-493.

条目包含的文件
文件名称/大小	文献类型	版本类型	开放类型	使用许可
Actin genes and thei（5635KB）	期刊论文	出版稿	限制开放	CC BY-NC-SA	浏览