Institutional Repository of Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences
Catalytic site flexibility facilitates the substrate and catalytic promiscuity of Vibrio dual lipase/transferase | |
Wang, Chongyang1,2,3,4; Liu, Changshui1,2,3; Zhu, Xiaochuan1,2; Peng, Quancai5; Ma, Qingjun1,2,3,4,5 | |
2023-08-09 | |
发表期刊 | NATURE COMMUNICATIONS |
卷号 | 14期号:1页码:11 |
通讯作者 | Ma, Qingjun(qma@qdio.ac.cn) |
摘要 | Vibrio dual lipases/transferases are virulence-related enzymes, with both substrate and catalytic promiscuity. Wang et al reveal their prominent structural flexibility, proposing a catalytic site tuning mechanism underlying enzyme promiscuity. Although enzyme catalysis is typified by high specificity, enzymes can catalyze various substrates (substrate promiscuity) and/or different reaction types (catalytic promiscuity) using a single active site. This interesting phenomenon is widely distributed in enzyme catalysis, with both fundamental and applied importance. To date, the mechanistic understanding of enzyme promiscuity is very limited. Herein, we report the structural mechanism underlying the substrate and catalytic promiscuity of Vibrio dual lipase/transferase (VDLT). Crystal structures of the VDLT from Vibrio alginolyticus (ValDLT) and its fatty acid complexes were solved, revealing prominent structural flexibility. In particular, the "Ser-His-Asp" catalytic triad machinery of ValDLT contains an intrinsically flexible oxyanion hole. Analysis of ligand-bound structures and mutagenesis showed that the flexible oxyanion hole and other binding residues can undergo distinct conformational changes to facilitate substrate and catalytic promiscuity. Our study reveals a previously unknown flexible form of the famous catalytic triad machinery and proposes a "catalytic site tuning" mechanism to expand the mechanistic paradigm of enzyme promiscuity. |
DOI | 10.1038/s41467-023-40455-y |
收录类别 | SCI |
语种 | 英语 |
资助项目 | Qingdao Innovation Leadership Program[2015ASTP] ; Pilot National Laboratory for Marine Science and Technology[18-1-2-12-zhc] |
WOS研究方向 | Science & Technology - Other Topics |
WOS类目 | Multidisciplinary Sciences |
WOS记录号 | WOS:001045317100017 |
出版者 | NATURE PORTFOLIO |
WOS关键词 | ENZYME PROMISCUITY ; STRUCTURAL BASIS ; PHOSPHOLIPASE ; PURIFICATION ; HEMOLYSIN ; PARAHAEMOLYTICUS ; IDENTIFICATION ; PATHOGENICITY ; ACTIVATION ; MECHANISM |
引用统计 | |
文献类型 | 期刊论文 |
条目标识符 | http://ir.qdio.ac.cn/handle/337002/182775 |
专题 | 实验海洋生物学重点实验室 |
通讯作者 | Ma, Qingjun |
作者单位 | 1.Chinese Acad Sci, Qingdao, Peoples R China 2.Chinese Acad Sci, Inst Oceanol, Shandong Prov Key Lab Expt Marine Biol, Qingdao, Peoples R China 3.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Biol & Biotechnol, Qingdao, Peoples R China 4.Univ Chinese Acad Sci, Beijing, Peoples R China 5.Chinese Acad Sci, Inst Oceanol, Ctr Ocean Mega Sci, Qingdao, Peoples R China |
第一作者单位 | 中国科学院海洋研究所 |
通讯作者单位 | 中国科学院海洋研究所 |
推荐引用方式 GB/T 7714 | Wang, Chongyang,Liu, Changshui,Zhu, Xiaochuan,et al. Catalytic site flexibility facilitates the substrate and catalytic promiscuity of Vibrio dual lipase/transferase[J]. NATURE COMMUNICATIONS,2023,14(1):11. |
APA | Wang, Chongyang,Liu, Changshui,Zhu, Xiaochuan,Peng, Quancai,&Ma, Qingjun.(2023).Catalytic site flexibility facilitates the substrate and catalytic promiscuity of Vibrio dual lipase/transferase.NATURE COMMUNICATIONS,14(1),11. |
MLA | Wang, Chongyang,et al."Catalytic site flexibility facilitates the substrate and catalytic promiscuity of Vibrio dual lipase/transferase".NATURE COMMUNICATIONS 14.1(2023):11. |
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