Scaphopoda is the sister taxon to Bivalvia: Evidence of ancient incomplete lineage sorting

doi:10.1073/pnas.2302361120

IOCAS-IR

	Scaphopoda is the sister taxon to Bivalvia: Evidence of ancient incomplete lineage sorting
	Song, Hao 1,2,3; Wang, Yunan 1,3; Shao, Haojing 4; Li, Zhuoqing 1,3; Hu, Pinli 4; Yap-Chiongco, Meghan K.5; Shi, Pu1,3 ; Zhang, Tao1,2,3 ; Li, Cui1,3 ; Wang, Yiguan 6; Ma, Peizhen1,3 ; Vinther, Jakob 7,8; Wang, Haiyan 1,2,3; Kocot, Kevin M.5,9
	2023-10-03
发表期刊	PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
ISSN	0027-8424
卷号	120 期号:40 页码:12
通讯作者	Wang, Haiyan(haiyanwang@qdio.ac.cn) ; Kocot, Kevin M.(kmkocot@ua.edu)
摘要	The almost simultaneous emergence of major animal phyla during the early Cambrian shaped modern animal biodiversity. Reconstructing evolutionary relationships among such closely spaced branches in the animal tree of life has proven to be a major challenge, hindering understanding of early animal evolution and the fossil record. This is particularly true in the species -rich and highly varied Mollusca where dramatic inconsistency among paleontological, morphological, and molecular evidence has led to a long- standing debate about the group's phylogeny and the nature of dozens of enigmatic fossil taxa. A critical step needed to overcome this issue is to supplement available genomic data, which is plentiful for well- studied lineages, with genomes from rare but key lineages, such as Scaphopoda. Here, by presenting chromosome -level genomes from both extant scaphopod orders and leveraging complete genomes spanning Mollusca, we provide strong support for Scaphopoda as the sister taxon of Bivalvia, revitalizing the morphology -based Diasoma hypothesis originally proposed 50 years ago. Our molecular clock analysis confidently dates the split between Bivalvia and Scaphopoda at similar to 520 Ma, prompting a reinterpretation of controversial laterally compressed Early Cambrian fossils, includingAnabarella, Watsonella, and Mellopegma, as stem diasomes. Moreover, we show that incongruence in the phylogenetic placement of Scaphopoda in previous phylogenomic studies was due to ancient incomplete lineage sorting (ILS) that occurred during the rapid radiation of Conchifera. Our findings highlight the need to consider ILS as a potential source of error in deep phylogeny reconstruction, especially in the context of the unique nature of the Cambrian Explosion.
关键词	Scaphopoda mollusc phylogeny mollusc fossils incomplete lineage sorting Cambrian explosion
DOI	10.1073/pnas.2302361120
收录类别	SCI
语种	英语
资助项目	Strategic Priority Research Program of the Chinese Academy of Sciences[XDB42000000] ; NSF of China[32002409] ; NSF of China[42376088] ; NSF of China[42076092] ; NSF of China[41776179] ; National Key R&D Program of China[2022YFD2401301] ; National Key R&D Program of China[2019YFD0901303] ; NSF[2021QNRC001] ; earmarked fund for CARS ; Youth Innovation Promotion Association CAS ; Young Elite Scientists Sponsorship Program by CAST ; [DEB-1846174] ; [CARS-49]
WOS研究方向	Science & Technology - Other Topics
WOS类目	Multidisciplinary Sciences
WOS记录号	WOS:001230735600003
出版者	NATL ACAD SCIENCES
WOS关键词	PHYLOGENETIC ANALYSIS ; MOLLUSCA ; PROVIDES ; DIVERSIFICATION ; CONSEQUENCES ; EVOLUTION ; SEQUENCES ; SELECTION ; ALIGNMENT ; PACKAGE
引用统计	被引频次：3[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.qdio.ac.cn/handle/337002/186459
专题	中国科学院海洋研究所
通讯作者	Wang, Haiyan; Kocot, Kevin M.
作者单位	1.Chinese Acad Sci, Inst Oceanol, Qingdao 266071, Peoples R China 2.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266237, Peoples R China 3.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 4.Chinese Acad Agr Sci, Agr Genom Inst Shenzhen, Shenzhen Branch, Guangdong Lab Lingnan Modern Agr, Shenzhen 518000, Peoples R China 5.Univ Alabama, Dept Biol Sci, Tuscaloosa, AL 35487 USA 6.Univ Edinburgh, Inst Ecol & Evolut, Edinburgh EH9 3FL, Scotland 7.Univ Bristol, Sch Biol Sci, Bristol BS8 1TQ, England 8.Univ Bristol, Sch Earth Sci, Bristol BS8 1TQ, England 9.Univ Alabama, Alabama Museum Nat Hist, Tuscaloosa, AL 35487 USA
第一作者单位	中国科学院海洋研究所
通讯作者单位	中国科学院海洋研究所
推荐引用方式 GB/T 7714	Song, Hao,Wang, Yunan,Shao, Haojing,et al. Scaphopoda is the sister taxon to Bivalvia: Evidence of ancient incomplete lineage sorting[J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,2023,120(40):12.
APA	Song, Hao.,Wang, Yunan.,Shao, Haojing.,Li, Zhuoqing.,Hu, Pinli.,...&Kocot, Kevin M..(2023).Scaphopoda is the sister taxon to Bivalvia: Evidence of ancient incomplete lineage sorting.PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,120(40),12.
MLA	Song, Hao,et al."Scaphopoda is the sister taxon to Bivalvia: Evidence of ancient incomplete lineage sorting".PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 120.40(2023):12.