Bacterial diversity and community structure in the East China Sea by 454 sequencing of the 16S rRNA gene

doi:10.1007/s00343-014-3215-2

	Bacterial diversity and community structure in the East China Sea by 454 sequencing of the 16S rRNA gene
	Dong Yi 1,2; Zhao Yuan 1; Zhang Wenyan 1; Li Yan3 ; Zhou Feng 4; Liu Chenggang 5; Wu Ying 6; Liu Sumei 7; Zhang Wuchang 1; Xiao Tian 1; Xiao, T (reprint author), Chinese Acad Sci, Inst Oceanol, Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China.
	2014-05-01
发表期刊	CHINESE JOURNAL OF OCEANOLOGY AND LIMNOLOGY
卷号	32 期号:3 页码:527-541
文章类型	Article
摘要	The 454 sequencing method was used to detect bacterial diversity and community structure in the East China Sea. Overall, 149 067 optimized reads with an average length of 454 nucleotides were obtained from 17 seawater samples and five sediment samples sourced in May 2011. A total of 22 phyla, 34 classes, 74 orders, 146 families, and 333 genera were identified in this study. Some of them were detected for the first time from the East China Sea. The estimated richness and diversity indices were both higher in the sediment samples compared with in the seawater samples. All the samples were divided by their diversity indices into four regions. Similarity analysis showed that the seawater samples could be classified into six groups. The groups differed from each other and had unique community structure characteristics. It was found that different water masses in the sampling areas may have had some influence on the bacterial community structure. A canonical correspondence analysis revealed that seawater samples in different areas and at different depths were affected by different environmental parameters. This study will lay the foundation for future research on microbiology in the East China Sea.
关键词	Bacterial Diversity Community Structure 454 Sequencing Water Masses Canonical Correspondence Analysis East China Sea
学科领域	Marine & Freshwater Biology ; Oceanography
DOI	10.1007/s00343-014-3215-2
收录类别	SCI
语种	英语
WOS记录号	WOS:000335767800006
引用统计	被引频次：21[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.qdio.ac.cn/handle/337002/23992
专题	海洋生态与环境科学重点实验室
通讯作者	Xiao, T (reprint author), Chinese Acad Sci, Inst Oceanol, Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China.
作者单位	1.Chinese Acad Sci, Inst Oceanol, Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China 2.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 3.Shandong Acad Sci, Energy Res Inst, Jinan 250014, Peoples R China 4.State Ocean Adm, Inst Oceanog 2, State Key Lab Satellite Ocean Environm Dynam, Hangzhou 310012, Zhejiang, Peoples R China 5.State Ocean Adm, Inst Oceanog 2, Lab Marine Ecosyst & Biogeochem, Hangzhou 310012, Zhejiang, Peoples R China 6.E China Normal Univ, State Key Lab Estuarine & Coastal Res, Shanghai 200062, Peoples R China 7.Ocean Univ China, Minist Educ, Key Lab Marine Chem Theory & Technol, Qingdao 266100, Peoples R China
第一作者单位	中国科学院海洋研究所
推荐引用方式 GB/T 7714	Dong Yi,Zhao Yuan,Zhang Wenyan,et al. Bacterial diversity and community structure in the East China Sea by 454 sequencing of the 16S rRNA gene[J]. CHINESE JOURNAL OF OCEANOLOGY AND LIMNOLOGY,2014,32(3):527-541.
APA	Dong Yi.,Zhao Yuan.,Zhang Wenyan.,Li Yan.,Zhou Feng.,...&Xiao, T .(2014).Bacterial diversity and community structure in the East China Sea by 454 sequencing of the 16S rRNA gene.CHINESE JOURNAL OF OCEANOLOGY AND LIMNOLOGY,32(3),527-541.
MLA	Dong Yi,et al."Bacterial diversity and community structure in the East China Sea by 454 sequencing of the 16S rRNA gene".CHINESE JOURNAL OF OCEANOLOGY AND LIMNOLOGY 32.3(2014):527-541.

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